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Sensitive and Rapid Detection of the New Delhi Metallo-Beta-Lactamase Gene by Loop-Mediated Isothermal Amplification

Identifieur interne : 001303 ( Main/Exploration ); précédent : 001302; suivant : 001304

Sensitive and Rapid Detection of the New Delhi Metallo-Beta-Lactamase Gene by Loop-Mediated Isothermal Amplification

Auteurs : Wei Liu [République populaire de Chine] ; Dayang Zou [République populaire de Chine] ; Yan Li [République populaire de Chine] ; Xuesong Wang [République populaire de Chine] ; Xiang He [République populaire de Chine] ; Xiao Wei [République populaire de Chine] ; Changlin Shao [République populaire de Chine] ; Xuelian Li [République populaire de Chine] ; Wei Shang [République populaire de Chine] ; Kaitao Yu [République populaire de Chine] ; Dawei Liu [République populaire de Chine] ; Yunmei Li [République populaire de Chine] ; Jing Guo [République populaire de Chine] ; Zhitao Yin [République populaire de Chine] ; Jing Yuan [République populaire de Chine]

Source :

RBID : PMC:3347096

Abstract

New Delhi metallo-β-lactamase 1 (NDM-1), which is associated with resistance to carbapenem, was first reported in 2008. A sensitive and rapid molecular assay to detect the plasmid blaNDM-1 in clinical isolates is needed to control its spread. We describe a loop-mediated isothermal amplification (LAMP) assay for the rapid detection of blaNDM-1 from pure culture and sputum, urine, and fecal samples. Eight sets of primers were designed to recognize six or eight distinct sequences on target blaNDM-1, and one set was selected as the most appropriate set of primers for its rapid detection. The specificity and sensitivity of the primers in the LAMP reactions for blaNDM-1 detection were determined. The sensitivity of the LAMP assay for blaNDM-1 detection in sputum, urine, and fecal samples was also tested. Two methods, namely, monitoring of turbidity and addition of calcein to the reaction tube, were used to determine negative and positive results. The results showed that target DNA was amplified and visualized by the two detection methods within 70 min at an isothermal temperature of 65°C. The sensitivity of LAMP, with a detection limit of 10.70 pg/μl DNA, was 100-fold greater than that of PCR. Thirteen infection bacterial strains without blaNDM-1 were selected for testing of specificity, and the results of the amplification were negative, which showed that the primers had good levels of specificity. The LAMP method reported here is demonstrated to be a potentially valuable means for the detection of blaNDM-1 and rapid clinical diagnosis, being fast, simple, and low in cost.


Url:
DOI: 10.1128/JCM.06647-11
PubMed: 22357496
PubMed Central: 3347096


Affiliations:


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Le document en format XML

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<name sortKey="He, Xiang" sort="He, Xiang" uniqKey="He X" first="Xiang" last="He">Xiang He</name>
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<wicri:regionArea>Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing</wicri:regionArea>
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<name sortKey="Wei, Xiao" sort="Wei, Xiao" uniqKey="Wei X" first="Xiao" last="Wei">Xiao Wei</name>
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<nlm:aff id="aff1">Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China</nlm:aff>
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<wicri:regionArea>Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing</wicri:regionArea>
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<name sortKey="Shao, Changlin" sort="Shao, Changlin" uniqKey="Shao C" first="Changlin" last="Shao">Changlin Shao</name>
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<nlm:aff id="aff1">Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing</wicri:regionArea>
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<settlement type="city">Pékin</settlement>
</placeName>
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<name sortKey="Li, Xuelian" sort="Li, Xuelian" uniqKey="Li X" first="Xuelian" last="Li">Xuelian Li</name>
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<nlm:aff id="aff1">Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China</nlm:aff>
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<name sortKey="Shang, Wei" sort="Shang, Wei" uniqKey="Shang W" first="Wei" last="Shang">Wei Shang</name>
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<wicri:regionArea>Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing</wicri:regionArea>
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<name sortKey="Yu, Kaitao" sort="Yu, Kaitao" uniqKey="Yu K" first="Kaitao" last="Yu">Kaitao Yu</name>
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<name sortKey="Liu, Dawei" sort="Liu, Dawei" uniqKey="Liu D" first="Dawei" last="Liu">Dawei Liu</name>
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<nlm:aff id="aff1">Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, China</nlm:aff>
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<settlement type="city">Pékin</settlement>
</placeName>
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<name sortKey="Li, Yunmei" sort="Li, Yunmei" uniqKey="Li Y" first="Yunmei" last="Li">Yunmei Li</name>
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<name sortKey="Guo, Jing" sort="Guo, Jing" uniqKey="Guo J" first="Jing" last="Guo">Jing Guo</name>
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<wicri:regionArea>Institute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing</wicri:regionArea>
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<name sortKey="Yin, Zhitao" sort="Yin, Zhitao" uniqKey="Yin Z" first="Zhitao" last="Yin">Zhitao Yin</name>
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<name sortKey="Yuan, Jing" sort="Yuan, Jing" uniqKey="Yuan J" first="Jing" last="Yuan">Jing Yuan</name>
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<title level="j">Journal of Clinical Microbiology</title>
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<p>New Delhi metallo-β-lactamase 1 (NDM-1), which is associated with resistance to carbapenem, was first reported in 2008. A sensitive and rapid molecular assay to detect the plasmid
<italic>bla</italic>
<sub>NDM-1</sub>
in clinical isolates is needed to control its spread. We describe a loop-mediated isothermal amplification (LAMP) assay for the rapid detection of
<italic>bla</italic>
<sub>NDM-1</sub>
from pure culture and sputum, urine, and fecal samples. Eight sets of primers were designed to recognize six or eight distinct sequences on target
<italic>bla</italic>
<sub>NDM-1</sub>
, and one set was selected as the most appropriate set of primers for its rapid detection. The specificity and sensitivity of the primers in the LAMP reactions for
<italic>bla</italic>
<sub>NDM-1</sub>
detection were determined. The sensitivity of the LAMP assay for
<italic>bla</italic>
<sub>NDM-1</sub>
detection in sputum, urine, and fecal samples was also tested. Two methods, namely, monitoring of turbidity and addition of calcein to the reaction tube, were used to determine negative and positive results. The results showed that target DNA was amplified and visualized by the two detection methods within 70 min at an isothermal temperature of 65°C. The sensitivity of LAMP, with a detection limit of 10.70 pg/μl DNA, was 100-fold greater than that of PCR. Thirteen infection bacterial strains without
<italic>bla</italic>
<sub>NDM-1</sub>
were selected for testing of specificity, and the results of the amplification were negative, which showed that the primers had good levels of specificity. The LAMP method reported here is demonstrated to be a potentially valuable means for the detection of
<italic>bla</italic>
<sub>NDM-1</sub>
and rapid clinical diagnosis, being fast, simple, and low in cost.</p>
</div>
</front>
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<name sortKey="Li, Xuelian" sort="Li, Xuelian" uniqKey="Li X" first="Xuelian" last="Li">Xuelian Li</name>
<name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name>
<name sortKey="Li, Yunmei" sort="Li, Yunmei" uniqKey="Li Y" first="Yunmei" last="Li">Yunmei Li</name>
<name sortKey="Liu, Dawei" sort="Liu, Dawei" uniqKey="Liu D" first="Dawei" last="Liu">Dawei Liu</name>
<name sortKey="Shang, Wei" sort="Shang, Wei" uniqKey="Shang W" first="Wei" last="Shang">Wei Shang</name>
<name sortKey="Shao, Changlin" sort="Shao, Changlin" uniqKey="Shao C" first="Changlin" last="Shao">Changlin Shao</name>
<name sortKey="Wang, Xuesong" sort="Wang, Xuesong" uniqKey="Wang X" first="Xuesong" last="Wang">Xuesong Wang</name>
<name sortKey="Wei, Xiao" sort="Wei, Xiao" uniqKey="Wei X" first="Xiao" last="Wei">Xiao Wei</name>
<name sortKey="Yin, Zhitao" sort="Yin, Zhitao" uniqKey="Yin Z" first="Zhitao" last="Yin">Zhitao Yin</name>
<name sortKey="Yu, Kaitao" sort="Yu, Kaitao" uniqKey="Yu K" first="Kaitao" last="Yu">Kaitao Yu</name>
<name sortKey="Yuan, Jing" sort="Yuan, Jing" uniqKey="Yuan J" first="Jing" last="Yuan">Jing Yuan</name>
<name sortKey="Zou, Dayang" sort="Zou, Dayang" uniqKey="Zou D" first="Dayang" last="Zou">Dayang Zou</name>
</country>
</tree>
</affiliations>
</record>

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